Tools
Graz TGV QSM Algorithm (Alpine QSM)
If you use this tool for your research, please cite:
Langkammer C, Bredies K, Poser BA, Barth M, Reishofer G, Fan AP, Bilgic B, Fazekas F, Mainero C, Ropele S. Fast Quantitative Susceptibility Mapping using 3D EPI and Total Generalized Variation. Neuroimage. 2015 May 1;111:622-30. doi:
10.1016/j.neuroimage.2015.02.041
Relaxometry toolbox: voxelwise fast T1,T2,T2* fitting
Acccelerated R2*, T2, or T1 mapping using a CUDA capable graphic card (a CPU version is provided as well).
by Christian Tinauer
If you use this tool for your research, please cite:
Tinauer C., Petrovic A., Ropele S., Pirpamer L. MRI-fitting: Fast estimation of relaxometry times using CUDA. Presentation number: 531, Abstract ID: 687; ESMRMB 2016, 33rd Annual Scientific Meeting, Vienna, AT, September 29 October 1: ePoster / Paper Poster / Clinical Review Poster / Software Exhibits. Magn Reson Mater Phy 29, 401-475 (2016).
https://doi.org/10.1007/s10334-016-0571-2
R2* mapping toolbox with background-field correction
by Martin Soellradl
If you use this tool for your research, please cite:
Soellradl M, Lesch A, Strasser J, et al. Assessment and correction of macroscopic field variations in 2D spoiled gradient-echo sequences. Magn Reson Med. 2019.
https://doi.org/10.1002/mrm.28139
If you find the provided scripts for z-shimming useful for your work, please cite:
Soellradl M, Strasser J, Lesch A, Stollberger R, Ropele S, Langkammer C. Adaptive slice-specific z-shimming for 2D spoiled gradient-echo sequences. Magn Reson Med. 2020.
https://doi.org/10.1002/mrm.28468
Please also cite the
numerical Bloch solver used for slice profile estimation:
Aigner CS, Clason C, Rund A, Stollberger R. Efficient high-resolution RF pulse design applied to simultaneous multi-slice excitation. J Magn Reson. 2016.
https://doi.org/10.1016/j.jmr.2015.11.013
QCFlex: A flexible quality control tool for large MRI cohorts
by Stefan Eggenreich
if you use this tool for your research please cite:
Eggenreich S, Ropele S, Pirpamer L. QCFlex: A flexible quality control tool for large MRI cohorts, ESMRMB 38th Annual Scientific Meeting, 7-9 October 2021
freely available for download
(qcflex.neuroimaging.at)